Intron-mediated alternative splicing of WOOD-ASSOCIATED NAC TRANSCRIPTION FACTOR1B regulates cell wall thickening during fiber development in Populus species.
Identifieur interne : 002158 ( Main/Exploration ); précédent : 002157; suivant : 002159Intron-mediated alternative splicing of WOOD-ASSOCIATED NAC TRANSCRIPTION FACTOR1B regulates cell wall thickening during fiber development in Populus species.
Auteurs : Yunjun Zhao [République populaire de Chine] ; Jiayan Sun ; Peng Xu ; Rui Zhang ; Laigeng LiSource :
- Plant physiology [ 1532-2548 ] ; 2014.
Descripteurs français
- KwdFr :
- ARN messager (génétique), ARN messager (métabolisme), Bois (cytologie), Bois (génétique), Données de séquences moléculaires (MeSH), Facteurs de transcription (génétique), Facteurs de transcription (métabolisme), Gènes de plante (MeSH), Introns (génétique), Paroi cellulaire (métabolisme), Phloème (cytologie), Phloème (ultrastructure), Populus (cytologie), Populus (génétique), Populus (ultrastructure), Protéines végétales (génétique), Protéines végétales (métabolisme), Régulation de l'expression des gènes végétaux (MeSH), Spécificité d'espèce (MeSH), Spécificité d'organe (génétique), Tiges de plante (génétique), Végétaux génétiquement modifiés (MeSH), Xylème (cytologie), Xylème (génétique), Xylème (métabolisme), Épissage alternatif (génétique).
- MESH :
- cytologie : Bois, Phloème, Populus, Xylème.
- génétique : ARN messager, Bois, Facteurs de transcription, Introns, Populus, Protéines végétales, Spécificité d'organe, Tiges de plante, Xylème, Épissage alternatif.
- métabolisme : ARN messager, Facteurs de transcription, Paroi cellulaire, Protéines végétales, Xylème.
- ultrastructure : Données de séquences moléculaires, Gènes de plante, Phloème, Populus, Régulation de l'expression des gènes végétaux, Spécificité d'espèce, Végétaux génétiquement modifiés.
English descriptors
- KwdEn :
- Alternative Splicing (genetics), Cell Wall (metabolism), Gene Expression Regulation, Plant (MeSH), Genes, Plant (MeSH), Introns (genetics), Molecular Sequence Data (MeSH), Organ Specificity (genetics), Phloem (cytology), Phloem (ultrastructure), Plant Proteins (genetics), Plant Proteins (metabolism), Plant Stems (genetics), Plants, Genetically Modified (MeSH), Populus (cytology), Populus (genetics), Populus (ultrastructure), RNA, Messenger (genetics), RNA, Messenger (metabolism), Species Specificity (MeSH), Transcription Factors (genetics), Transcription Factors (metabolism), Wood (cytology), Wood (genetics), Xylem (cytology), Xylem (genetics), Xylem (metabolism).
- MESH :
- chemical , genetics : Plant Proteins, RNA, Messenger, Transcription Factors.
- cytology : Phloem, Populus, Wood, Xylem.
- genetics : Alternative Splicing, Introns, Organ Specificity, Plant Stems, Populus, Wood, Xylem.
- metabolism : Cell Wall, Plant Proteins, RNA, Messenger, Transcription Factors, Xylem.
- ultrastructure : Phloem, Populus.
- Gene Expression Regulation, Plant, Genes, Plant, Molecular Sequence Data, Plants, Genetically Modified, Species Specificity.
Abstract
Alternative splicing is an important mechanism involved in regulating the development of multicellular organisms. Although many genes in plants undergo alternative splicing, little is understood of its significance in regulating plant growth and development. In this study, alternative splicing of black cottonwood (Populus trichocarpa) wood-associated NAC domain transcription factor (PtrWNDs), PtrWND1B, is shown to occur exclusively in secondary xylem fiber cells. PtrWND1B is expressed with a normal short-transcript PtrWND1B-s as well as its alternative long-transcript PtrWND1B-l. The intron 2 structure of the PtrWND1B gene was identified as a critical sequence that causes PtrWND1B alternative splicing. Suppression of PtrWND1B expression specifically inhibited fiber cell wall thickening. The two PtrWND1B isoforms play antagonistic roles in regulating cell wall thickening during fiber cell differentiation in Populus spp. PtrWND1B-s overexpression enhanced fiber cell wall thickening, while overexpression of PtrWND1B-l repressed fiber cell wall thickening. Alternative splicing may enable more specific regulation of processes such as fiber cell wall thickening during wood formation.
DOI: 10.1104/pp.113.231134
PubMed: 24394777
PubMed Central: PMC3912104
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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(génétique)</term><term>Végétaux génétiquement modifiés (MeSH)</term><term>Xylème (cytologie)</term><term>Xylème (génétique)</term><term>Xylème (métabolisme)</term><term>Épissage alternatif (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term><term>RNA, Messenger</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="cytologie" xml:lang="fr"><term>Bois</term><term>Phloème</term><term>Populus</term><term>Xylème</term></keywords><keywords scheme="MESH" qualifier="cytology" xml:lang="en"><term>Phloem</term><term>Populus</term><term>Wood</term><term>Xylem</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Alternative Splicing</term><term>Introns</term><term>Organ Specificity</term><term>Plant Stems</term><term>Populus</term><term>Wood</term><term>Xylem</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN 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Although many genes in plants undergo alternative splicing, little is understood of its significance in regulating plant growth and development. In this study, alternative splicing of black cottonwood (Populus trichocarpa) wood-associated NAC domain transcription factor (PtrWNDs), PtrWND1B, is shown to occur exclusively in secondary xylem fiber cells. PtrWND1B is expressed with a normal short-transcript PtrWND1B-s as well as its alternative long-transcript PtrWND1B-l. The intron 2 structure of the PtrWND1B gene was identified as a critical sequence that causes PtrWND1B alternative splicing. Suppression of PtrWND1B expression specifically inhibited fiber cell wall thickening. The two PtrWND1B isoforms play antagonistic roles in regulating cell wall thickening during fiber cell differentiation in Populus spp. PtrWND1B-s overexpression enhanced fiber cell wall thickening, while overexpression of PtrWND1B-l repressed fiber cell wall thickening. Alternative splicing may enable more specific regulation of processes such as fiber cell wall thickening during wood formation. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24394777</PMID><DateCompleted><Year>2014</Year><Month>10</Month><Day>13</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1532-2548</ISSN><JournalIssue CitedMedium="Internet"><Volume>164</Volume><Issue>2</Issue><PubDate><Year>2014</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Plant physiology</Title><ISOAbbreviation>Plant Physiol</ISOAbbreviation></Journal><ArticleTitle>Intron-mediated alternative splicing of WOOD-ASSOCIATED NAC TRANSCRIPTION FACTOR1B regulates cell wall thickening during fiber development in Populus species.</ArticleTitle><Pagination><MedlinePgn>765-76</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1104/pp.113.231134</ELocationID><Abstract><AbstractText>Alternative splicing is an important mechanism involved in regulating the development of multicellular organisms. Although many genes in plants undergo alternative splicing, little is understood of its significance in regulating plant growth and development. In this study, alternative splicing of black cottonwood (Populus trichocarpa) wood-associated NAC domain transcription factor (PtrWNDs), PtrWND1B, is shown to occur exclusively in secondary xylem fiber cells. PtrWND1B is expressed with a normal short-transcript PtrWND1B-s as well as its alternative long-transcript PtrWND1B-l. The intron 2 structure of the PtrWND1B gene was identified as a critical sequence that causes PtrWND1B alternative splicing. Suppression of PtrWND1B expression specifically inhibited fiber cell wall thickening. The two PtrWND1B isoforms play antagonistic roles in regulating cell wall thickening during fiber cell differentiation in Populus spp. PtrWND1B-s overexpression enhanced fiber cell wall thickening, while overexpression of PtrWND1B-l repressed fiber cell wall thickening. Alternative splicing may enable more specific regulation of processes such as fiber cell wall thickening during wood formation. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhao</LastName><ForeName>Yunjun</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>National Key Laboratory of Plant Molecular Genetics/Chinese Academy of Sciences Key Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sun</LastName><ForeName>Jiayan</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Peng</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Rui</ForeName><Initials>R</Initials></Author><Author 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MajorTopicYN="N">Phloem</DescriptorName><QualifierName UI="Q000166" MajorTopicYN="N">cytology</QualifierName><QualifierName UI="Q000648" MajorTopicYN="N">ultrastructure</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018547" MajorTopicYN="N">Plant Stems</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D030821" MajorTopicYN="N">Plants, Genetically Modified</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000166" MajorTopicYN="Y">cytology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000648" MajorTopicYN="N">ultrastructure</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012333" MajorTopicYN="N">RNA, Messenger</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName><QualifierName UI="Q000166" MajorTopicYN="N">cytology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D052584" MajorTopicYN="N">Xylem</DescriptorName><QualifierName 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